Fig. 3

Gene Ontology (GO) analysis of upregulated nearby mRNAs. (A, D, and G) The pie chart displays the top 10 significant enrichment terms for biological process (BP), cellular component (CC), and molecular function (MF), respectively. (B, E, and H) The bar plot shows the top 10 enrichment scores (-log10 (p-value)) for BP, CC, and MF, respectively. (C, F, and I) The bar plot shows the top 10 fold enrichment values ((count/pop. hits)/ (list. total/pop. total)) for BP, CC, and MF, respectively. The term “count” refers to the number of differentially expressed (DE) genes associated with the listed ID of the gene ontology term, while “pop. hits” refers to the number of background population genes associated with the listed ID of the gene ontology term. “List. Total” represents the total number of DE genes, and “Pop. Total” represents the total number of background population genes